Transcript: lnc-KRT80-1:2

Basic information

LNCipedia transcript ID: lnc-KRT80-1:2 
LNCipedia gene ID: lnc-KRT80-1
Ensembl Gene ID: ENSG00000257137
Ensembl Transcript ID: ENST00000551894
Location (hg38): chr12:52205584-52210823
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1257 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551894.1; RP11-845M18.3-001; OTTHUMT00000405174.1; ENST00000551894.5
Alternative gene names: ENSG00000257137.1; RP11-845M18.3; OTTHUMG00000169626.1; C12orf80; ENSG00000257137.5; ENSG00000257137.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.0931 non-coding 
CPAT coding probability 31.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRT80-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRT80-1:2
4.0 lnc-KRT80-1:2
4.1 lnc-KRT80-1:2
5.0 lnc-KRT80-1:2
5.1 lnc-FIGNL2-1:8
5.2 lnc-KRT80-1:2