Transcript: lnc-KRT80-1:9

Basic information

LNCipedia transcript ID: lnc-KRT80-1:9 
LNCipedia gene ID: lnc-KRT80-1
Ensembl Gene ID: ENSG00000257137
Ensembl Transcript ID: ENST00000639627
Location (hg38): chr12:52205556-52213583
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1220 bp
Exons: 4
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000639627.1
Alternative gene names: ENSG00000257137.6; C12orf80


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.0931 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRT80-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-FIGNL2-1:4
5.1 lnc-FIGNL2-1:4
5.2 lnc-KRT80-1:9