Transcript: lnc-KRT80-4:2

Basic information

LNCipedia transcript ID: lnc-KRT80-4:2 
LNCipedia gene ID: lnc-KRT80-4
Ensembl Gene ID: ENSG00000259884
Ensembl Transcript ID: ENST00000564531
Location (hg38): chr12:52058459-52059332
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 542 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564531.1; RP11-1100L3.8-002; OTTHUMT00000430853.1; NONHSAT028324
Alternative gene names: ENSG00000259884.1; RP11-1100L3.8; OTTHUMG00000175694.1; AC025259.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.7832 non-coding 
CPAT coding probability 15.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRT80-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRT80-4:2
4.0 lnc-KRT80-4:2
4.1 lnc-KRT80-4:2
5.0 lnc-KRT80-4:2
5.1 lnc-FIGNL2-4:2
5.2 lnc-KRT80-4:2