Transcript: lnc-KRTAP5-11-1:1

Basic information

LNCipedia transcript ID: lnc-KRTAP5-11-1:1 
LNCipedia gene ID: lnc-KRTAP5-11-1
Ensembl Gene ID: ENSG00000254972
Ensembl Transcript ID: ENST00000532530
Location (hg38): chr11:71701268-71705404
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532530; ENST00000532530.1; RP11-167J8.3-001; OTTHUMT00000394696.1; NONHSAT022699
Alternative gene names: ENSG00000254972; RP11-167J8.3; ENSG00000254972.1; OTTHUMG00000167460.1; AP003498.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.6898 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRTAP5-11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP000867.1-1:1
3.1 lnc-AP000867.1-1:1
4.0 lnc-AP000867.1-1:1
4.1 lnc-AP000867.1-1:1
5.0 lnc-AP000867.1-1:1
5.1 lnc-UCP3-63:1
5.2 lnc-KRTAP5-11-1:1