Transcript: lnc-KRTAP5-4-1:1

Basic information

LNCipedia transcript ID: lnc-KRTAP5-4-1:1 
LNCipedia gene ID: lnc-KRTAP5-4-1
Ensembl Gene ID: ENSG00000231487
Ensembl Transcript ID: ENST00000415865
Location (hg38): chr11:1662584-1663343
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415865; ENST00000415865.1; AP006285.7-001; OTTHUMT00000127923.1; NONHSAT017411
Alternative gene names: ENSG00000231487; AP006285.7; ENSG00000231487.1; OTTHUMG00000057558.1; AP006285.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.4678 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRTAP5-4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KRTAP5-4-1:1
3.1 lnc-KRTAP5-4-1:1
4.0 lnc-KRTAP5-4-1:1
4.1 lnc-KRTAP5-4-1:1
5.0 lnc-KRTAP5-4-1:1
5.1 lnc-OR52A1-64:1
5.2 lnc-KRTAP5-4-1:1