Transcript: lnc-KRTDAP-1:3

Basic information

LNCipedia transcript ID: lnc-KRTDAP-1:3 
LNCipedia gene ID: lnc-KRTDAP-1
Ensembl Gene ID: ENSG00000232680
Ensembl Transcript ID: ENST00000428426
Location (hg38): chr19:35432957-35434642
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1000 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT065843; ENST00000428426.2
Alternative gene names: ENSG00000232680.2; AC002511.3; AC002511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.2194 non-coding 
CPAT coding probability 12.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRTDAP-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRTDAP-1:3
4.0 lnc-KRTDAP-1:3
4.1 lnc-KRTDAP-1:3
5.0 lnc-KRTDAP-1:3
5.1 lnc-SCGB2B2-41:4
5.2 lnc-KRTDAP-1:3