Transcript: lnc-LAMA1-2:1

Basic information

LNCipedia transcript ID: lnc-LAMA1-2:1 
LNCipedia gene ID: lnc-LAMA1-2
Ensembl Gene ID: ENSG00000263797
Ensembl Transcript ID: ENST00000583659
Location (hg38): chr18:6873399-6875024
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 544 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583659.1; RP11-146G7.2-001; OTTHUMT00000443720.1; NONHSAT057122
Alternative gene names: ENSG00000263797.1; RP11-146G7.2; OTTHUMG00000178874.1; AP005210.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 149.6241 coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LAMA1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMA1-2:1
4.0 lnc-LAMA1-2:1
4.1 lnc-LAMA1-2:1
5.0 lnc-LAMA1-2:1
5.1 lnc-SMAD2-329:1
5.2 lnc-LAMA1-2:1