Transcript: lnc-LAMA1-5:2

Basic information

LNCipedia transcript ID: lnc-LAMA1-5:2 
LNCipedia gene ID: lnc-LAMA1-5
Ensembl Gene ID: ENSG00000266767
Ensembl Transcript ID: ENST00000579509
Location (hg38): chr18:7741310-7749443
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1057 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579509.1; RP11-678G15.2-002; OTTHUMT00000444010.1
Alternative gene names: ENSG00000266767.1; RP11-678G15.2; OTTHUMG00000178929.1; AP000897.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.5168 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMA1-5:2
4.0 lnc-LAMA1-5:2
4.1 lnc-LAMA1-5:2
5.0 lnc-LAMA1-5:2
5.1 lnc-SMAD2-321:2
5.2 lnc-LAMA1-5:2