Transcript: lnc-LAMA4-2:1

Basic information

LNCipedia transcript ID: lnc-LAMA4-2:1 
LNCipedia gene ID: lnc-LAMA4-2
Ensembl Gene ID: ENSG00000232299
Ensembl Transcript ID: ENST00000446322
Location (hg38): chr6:112476538-112481636
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446322; ENST00000446322.1; RP1-105O18.1-001; OTTHUMT00000041888.1; NONHSAT114526
Alternative gene names: ENSG00000232299; RP1-105O18.1; ENSG00000232299.1; OTTHUMG00000015393.1; AL357514.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.8197 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LAMA4-2:1
3.1 lnc-LAMA4-2:1
4.0 lnc-LAMA4-2:1
4.1 lnc-LAMA4-2:1
5.0 lnc-LAMA4-2:1
5.1 lnc-LAMA4-12:1
5.2 lnc-LAMA4-2:1