Transcript: lnc-LAMA5-1:1

Basic information

LNCipedia transcript ID: lnc-LAMA5-1:1 
LNCipedia gene ID: lnc-LAMA5-1
Location (hg38): chr20:62305432-62306396
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 307 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000448371.1; RP11-157P1.4-002; OTTHUMT00000080025.1; NONHSAT080725
Alternative gene names: ENSG00000226332.1; RP11-157P1.4; OTTHUMG00000032910.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -286.7359 non-coding 
CPAT coding probability 6.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMA5-1:1
4.0 lnc-LAMA5-1:1
4.1 lnc-LAMA5-1:1
5.0 lnc-LAMA5-1:1
5.1 lnc-SPATA2-157:3
5.2 lnc-LAMA5-1:1