Transcript: lnc-LAMA5-1:3

Basic information

LNCipedia transcript ID: lnc-LAMA5-1:3 
LNCipedia gene ID: lnc-LAMA5-1
Location (hg38): chr20:62307955-62309257
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 894 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT080727
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.2877 non-coding 
CPAT coding probability 8.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA5-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMA5-2:1
4.0 lnc-LAMA5-2:1
4.1 lnc-LAMA5-1:3
5.0 lnc-LAMA5-1:3
5.1 lnc-SPATA2-157:1
5.2 lnc-LAMA5-1:3