Transcript: lnc-LAMA5-1:4

Basic information

LNCipedia transcript ID: lnc-LAMA5-1:4 
LNCipedia gene ID: lnc-LAMA5-1
Location (hg38): chr20:62305437-62308748
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2558 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226332.2|FTMT27700005460.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.2017 non-coding 
CPAT coding probability 84.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LAMA5-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LAMA5-1:4
5.0 lnc-LAMA5-1:4
5.1 lnc-SPATA2-157:2
5.2 lnc-LAMA5-1:4