Transcript: lnc-LAMA5-3:2

Basic information

LNCipedia transcript ID: lnc-LAMA5-3:2 
LNCipedia gene ID: lnc-LAMA5-3
Location (hg38): chr20:62300869-62302153
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 540 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT080723
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.1625 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA5-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMA5-3:2
4.0 lnc-LAMA5-3:2
4.1 lnc-LAMA5-3:2
5.0 lnc-LAMA5-3:2
5.1 lnc-SPATA2-156:2
5.2 lnc-LAMA5-3:2