Transcript: lnc-LAMB3-1:2

Basic information

LNCipedia transcript ID: lnc-LAMB3-1:2 
LNCipedia gene ID: lnc-LAMB3-1
Ensembl Gene ID: ENSG00000227591
Ensembl Transcript ID: ENST00000445272
Location (hg38): chr1:209661364-209675247
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 381 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445272.1; RP1-28O10.1-001; OTTHUMT00000088730.1; ENST00000445272.5
Alternative gene names: ENSG00000227591.1; RP1-28O10.1; OTTHUMG00000036478.1; ENSG00000227591.5; AL031316.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.4396 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMB3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMB3-1:2
4.0 lnc-LAMB3-1:2
4.1 lnc-LAMB3-1:2
5.0 lnc-LAMB3-1:2
5.1 lnc-IRF6-1:11
5.2 lnc-LAMB3-1:2