Transcript: lnc-LAMB3-2:1

Basic information

LNCipedia transcript ID: lnc-LAMB3-2:1 
LNCipedia gene ID: lnc-LAMB3-2
Location (hg38): chr1:209528455-209567673
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 865 bp
Exons: 7
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000720; ENST00000424696.1; RP1-272L16.1-001; OTTHUMT00000088523.1; NONHSAT009218
Alternative gene names: XLOC_001186; linc-PLXNA2-3; ENSG00000224260.1; RP1-272L16.1; OTTHUMG00000036359.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.1732 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMB3-2:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Liu (2014), A computational framework to infer human disease-associated long noncoding RNAs., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LAMB3-1:1
3.1 lnc-LAMB3-2:1
4.0 lnc-LAMB3-2:1
4.1 lnc-LAMB3-2:1
5.0 lnc-LAMB3-2:1
5.1 lnc-IRF6-12:6
5.2 lnc-LAMB3-2:1