Transcript: lnc-LAMB3-2:3

Basic information

LNCipedia transcript ID: lnc-LAMB3-2:3 
LNCipedia gene ID: lnc-LAMB3-2
Ensembl Gene ID: ENSG00000224260
Ensembl Transcript ID: ENST00000424696
Location (hg38): chr1:209528455-209567673
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 863 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT009219; ENST00000424696.2; ENST00000424696.6
Alternative gene names: ENSG00000224260.2; RP1-272L16.1; ENSG00000224260.6; AL023754.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.477 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMB3-2:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Liu (2014), A computational framework to infer human disease-associated long noncoding RNAs., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMB3-2:3
4.0 lnc-LAMB3-2:3
4.1 lnc-LAMB3-2:3
5.0 lnc-LAMB3-2:3
5.1 lnc-IRF6-12:7
5.2 lnc-LAMB3-2:3