Transcript: lnc-LAMB3-2:5

Basic information

LNCipedia transcript ID: lnc-LAMB3-2:5 
LNCipedia gene ID: lnc-LAMB3-2
Location (hg38): chr1:209511006-209567776
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 10370 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224260.2|MICT00000029637.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -77.702 non-coding 
CPAT coding probability 6.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMB3-2:5 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Liu (2014), A computational framework to infer human disease-associated long noncoding RNAs., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LAMB3-2:5
5.0 lnc-LAMB3-2:5
5.1 lnc-IRF6-12:1
5.2 lnc-LAMB3-2:5