Transcript: lnc-LANCL2-1:7

Basic information

LNCipedia transcript ID: lnc-LANCL2-1:7 
LNCipedia gene ID: lnc-LANCL2-1
Ensembl Gene ID: ENSG00000231394
Ensembl Transcript ID: ENST00000449899
Location (hg38): chr7:55593777-55595006
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013016; ENST00000449899; ENST00000449899.1; RP11-310H4.3-001; OTTHUMT00000343072.1; NONHSAT120688
Alternative gene names: XLOC_006106; linc-ZNF713-1; ENSG00000231394; RP11-310H4.3; ENSG00000231394.1; OTTHUMG00000156122.1; AC099681.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.7255 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LANCL2-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LANCL2-3:1
3.1 lnc-LANCL2-3:1
4.0 lnc-LANCL2-3:1
4.1 lnc-LANCL2-1:7
5.0 lnc-LANCL2-1:7
5.1 lnc-CCT6A-22:7
5.2 lnc-LANCL2-1:7