Transcript: lnc-LAPTM4A-2:1

Basic information

LNCipedia transcript ID: lnc-LAPTM4A-2:1 
LNCipedia gene ID: lnc-LAPTM4A-2
Ensembl Gene ID: ENSG00000234378
Ensembl Transcript ID: ENST00000430429
Location (hg38): chr2:20063856-20106829
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003223; ENST00000430429; ENST00000430429.1; AC098828.2-001; OTTHUMT00000323916.1; NONHSAT069424
Alternative gene names: XLOC_002008; linc-LAPTM4A-1; ENSG00000234378; AC098828.2; ENSG00000234378.1; OTTHUMG00000151787.1; AC098828.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.2149 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAPTM4A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LAPTM4A-2:1
3.1 lnc-LAPTM4A-2:1
4.0 lnc-LAPTM4A-2:1
4.1 lnc-LAPTM4A-2:1
5.0 lnc-LAPTM4A-2:1
5.1 lnc-RAD51AP2-38:1
5.2 lnc-LAPTM4A-2:1