Transcript: lnc-LCN2-1:4

Basic information

LNCipedia transcript ID: lnc-LCN2-1:4 
LNCipedia gene ID: lnc-LCN2-1
Ensembl Gene ID: ENSG00000232850
Ensembl Transcript ID: ENST00000443493
Location (hg38): chr9:128128529-128130628
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2100 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443493.3
Alternative gene names: ENSG00000232850.3; PTGES2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.818 non-coding 
CPAT coding probability 74.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LCN2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL590708.2-1:2
4.1 lnc-AL590708.2-1:2
5.0 lnc-AL590708.2-1:2
5.1 lnc-PTPA-68:2
5.2 lnc-LCN2-1:4