Transcript: lnc-LELP1-1:1

Basic information

LNCipedia transcript ID: lnc-LELP1-1:1 
LNCipedia gene ID: lnc-LELP1-1
Ensembl Gene ID: ENSG00000229699
Ensembl Transcript ID: ENST00000427145
RefSeq ID: NR_110685
Location (hg38): chr1:153174518-153191676
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2254 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000314; ENST00000427145; ENST00000427145.1; RP1-140J1.1-001; OTTHUMT00000039103.1; NONHSAT006510; NR_110685; NR_110685.1
Alternative gene names: XLOC_000412; linc-LELP1; ENSG00000229699; RP1-140J1.1; ENSG00000229699.1; OTTHUMG00000013934.1; AL161636.1; LOC101928009


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.4201 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LELP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LELP1-1:1
3.1 lnc-LELP1-1:1
4.0 lnc-LELP1-1:1
4.1 lnc-LELP1-1:1
5.0 lnc-LELP1-1:1
5.1 lnc-LELP1-1:1
5.2 lnc-LELP1-1:1