Transcript: lnc-LEMD3-5:1

Basic information

LNCipedia transcript ID: lnc-LEMD3-5:1 
LNCipedia gene ID: lnc-LEMD3-5
Location (hg38): chr12:65017468-65019806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000360528; ENST00000360528.2; RP11-168J19.2-001; OTTHUMT00000401309.1; NONHSAT029177
Alternative gene names: ENSG00000198671; RP11-168J19.2; ENSG00000198671.2; OTTHUMG00000168839.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0563 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LEMD3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D30-2:1
3.1 lnc-TBC1D30-3:1
4.0 lnc-LEMD3-5:1
4.1 lnc-LEMD3-5:1
5.0 lnc-LEMD3-5:1
5.1 lnc-TBC1D30-5:2
5.2 lnc-LEMD3-5:1