Transcript: lnc-LEXM-2:10

Basic information

LNCipedia transcript ID: lnc-LEXM-2:10 
LNCipedia gene ID: lnc-LEXM-2
Ensembl Gene ID: ENSG00000233203
Ensembl Transcript ID: ENST00000433690
Location (hg38): chr1:54887732-54888850
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433690.1; RP11-67L3.4-004; OTTHUMT00000027679.1
Alternative gene names: ENSG00000233203.2; RP11-67L3.4; OTTHUMG00000009988.1; ENSG00000233203.6; AC096536.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.3286 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LEXM-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf177-2:5
4.0 lnc-C1orf177-2:5
4.1 lnc-C1orf177-2:5
5.0 lnc-C1orf177-2:5
5.1 lnc-MROH7-TTC4-6:13
5.2 lnc-LEXM-2:10