Transcript: lnc-LGALS2-1:1

Basic information

LNCipedia transcript ID: lnc-LGALS2-1:1 
LNCipedia gene ID: lnc-LGALS2-1
Ensembl Gene ID: ENSG00000233360
Ensembl Transcript ID: ENST00000456099
RefSeq ID: NR_109952
Location (hg38): chr22:37641832-37658377
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1945 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000456099.1; Z83844.1-001; OTTHUMT00000319489.1; NONHSAT086618; NR_109952; NR_109952.1
Alternative gene names: ENSG00000233360.2; Z83844.1; OTTHUMG00000150662.1; ENSG00000233360.4; Z83844.2; LOC101927051


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 43.7799 non-coding 
CPAT coding probability 29.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LGALS2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LGALS2-1:1
4.0 lnc-LGALS2-1:1
4.1 lnc-LGALS2-1:1
5.0 lnc-LGALS2-1:1
5.1 lnc-MYH9-33:1
5.2 lnc-LGALS2-1:1