Transcript: lnc-LGALS9C-3:1

Basic information

LNCipedia transcript ID: lnc-LGALS9C-3:1 
LNCipedia gene ID: lnc-LGALS9C-3
Location (hg38): chr17:18427190-18475920
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000580052.1; RP1-37N7.4-001; OTTHUMT00000448454.1; NONHSAT146372
Alternative gene names: ENSG00000265785.1; RP1-37N7.4; OTTHUMG00000179838.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 220.5138 coding 
CPAT coding probability 9.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LGALS9C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL353997.5.1-3:1
4.0 lnc-AL353997.5.1-3:1
4.1 lnc-AL353997.5.1-3:1
5.0 lnc-AL353997.5.1-3:1
5.1 lnc-GLP2R-129:1
5.2 lnc-LGALS9C-3:1