Transcript: lnc-LGALSL-2:2

Basic information

LNCipedia transcript ID: lnc-LGALSL-2:2 
LNCipedia gene ID: lnc-LGALSL-2
Ensembl Gene ID: ENSG00000225889
Ensembl Transcript ID: ENST00000413030
Location (hg38): chr2:64206975-64251355
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413030; ENST00000413030.2; AC074289.1-005; OTTHUMT00000327287.2; NONHSAT071096; ENST00000413030.6
Alternative gene names: ENSG00000225889; AC074289.1; ENSG00000225889.2; OTTHUMG00000152632.4; ENSG00000225889.3; ENSG00000225889.7; AC012368.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.0658 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LGALSL-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LGALSL-2:2
3.1 lnc-LGALSL-2:2
4.0 lnc-LGALSL-2:2
4.1 lnc-LGALSL-2:2
5.0 lnc-LGALSL-2:2
5.1 lnc-AFTPH-15:3
5.2 lnc-LGALSL-2:2