Transcript: lnc-LHX1-1:1

Basic information

LNCipedia transcript ID: lnc-LHX1-1:1 
LNCipedia gene ID: lnc-LHX1-1
Ensembl Gene ID: ENSG00000277911
Ensembl Transcript ID: ENST00000613270
Location (hg38): chr17:36980167-36980422
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 256 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053249; ENST00000593278.1; ENST00000613270.1
Alternative gene names: ENSG00000267306.1; RP11-333J10.2; ENSG00000277911.1; AC243773.3; AC243773.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.4702 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LHX1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LHX1-1:1
4.0 lnc-LHX1-1:1
4.1 lnc-LHX1-1:1
5.0 lnc-LHX1-1:1
5.1 lnc-RPL19-51:1
5.2 lnc-LHX1-1:1