Transcript: lnc-LHX4-1:1

Basic information

LNCipedia transcript ID: lnc-LHX4-1:1 
LNCipedia gene ID: lnc-LHX4-1
Location (hg38): chr1:180198009-180200724
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2716 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT008249; NR_026900
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.6068 non-coding 
CPAT coding probability 15.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LHX4-1:1 yes no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LHX4-1:1
4.0 lnc-LHX4-1:1
4.1 lnc-LHX4-1:1
5.0 lnc-LHX4-1:1
5.1 lnc-CEP350-5:1
5.2 lnc-LHX4-1:1