Transcript: lnc-LIFR-1:2

Basic information

LNCipedia transcript ID: lnc-LIFR-1:2 
LNCipedia gene ID: lnc-LIFR-1
Location (hg38): chr5:38460927-38468307
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 456 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000510469.1; CTD-2263F21.1-001; OTTHUMT00000367320.1; NONHSAT101093
Alternative gene names: ENSG00000251257.1; CTD-2263F21.1; OTTHUMG00000162102.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.5037 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIFR-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIFR-1:2
4.0 lnc-LIFR-1:2
4.1 lnc-LIFR-1:2
5.0 lnc-LIFR-1:2
5.1 lnc-SELENOP-59:3
5.2 lnc-LIFR-1:2