Transcript: lnc-LIFR-1:3

Basic information

LNCipedia transcript ID: lnc-LIFR-1:3 
LNCipedia gene ID: lnc-LIFR-1
Ensembl Gene ID: ENSG00000251257
Ensembl Transcript ID: ENST00000510469
Location (hg38): chr5:38460925-38468307
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 458 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510469.2
Alternative gene names: ENSG00000251257.2; CTD-2263F21.1; AC010457.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -112.5037 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIFR-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LIFR-1:3
4.1 lnc-LIFR-1:3
5.0 lnc-LIFR-1:3
5.1 lnc-SELENOP-59:4
5.2 lnc-LIFR-1:3