Transcript: lnc-LIG3-1:3

Basic information

LNCipedia transcript ID: lnc-LIG3-1:3 
LNCipedia gene ID: lnc-LIG3-1
Location (hg38): chr17:35005256-35006737
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1482 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000415412.1; RP5-837J1.2-201; NONHSAT146890
Alternative gene names: ENSG00000224113.2; RP5-837J1.2; OTTHUMG00000179815.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.8865 non-coding 
CPAT coding probability 28.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIG3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC004223.1-1:2
4.0 lnc-AC004223.1-1:2
4.1 lnc-AC004223.1-1:2
5.0 lnc-AC004223.1-1:2
5.1 lnc-RPL19-89:2
5.2 lnc-LIG3-1:3