Transcript: lnc-LIMS3-1:10

Basic information

LNCipedia transcript ID: lnc-LIMS3-1:10 
LNCipedia gene ID: lnc-LIMS3-1
Location (hg38): chr2:109936342-109968577
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2918 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000417926.1; AC013271.3-001; OTTHUMT00000330194.1; NONHSAT073155; ENST00000417926.5
Alternative gene names: ENSG00000186148.6; AC013271.3; OTTHUMG00000153222.1; ENSG00000186148.7; ENSG00000186148.11; ENSG00000186148.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.7436 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LIMS3-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3.1-1:1
4.0 lnc-LIMS3-1:10
4.1 lnc-LIMS3-1:10
5.0 lnc-LIMS3-1:10
5.1 lnc-SULT1C4-22:5
5.2 lnc-LIMS3-1:10