Transcript: lnc-LIMS3-1:9

Basic information

LNCipedia transcript ID: lnc-LIMS3-1:9 
LNCipedia gene ID: lnc-LIMS3-1
Location (hg38): chr2:109933161-109968552
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1208 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000303002.7; ENST00000303002.11
Alternative gene names: ENSG00000186148.7; AC013271.3; ENSG00000186148.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.7436 non-coding 
CPAT coding probability 7.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LIMS3-1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3.1-1:11
4.0 lnc-LIMS3-1:9
4.1 lnc-LIMS3-1:9
5.0 lnc-LIMS3-1:9
5.1 lnc-SULT1C4-22:4
5.2 lnc-LIMS3-1:9