Transcript: lnc-LIMS4-1:6

Basic information

LNCipedia transcript ID: lnc-LIMS4-1:6 
LNCipedia gene ID: lnc-LIMS4-1
Ensembl Gene ID: ENSG00000273471
Ensembl Transcript ID: ENST00000488671
Location (hg38): chr2:110386411-110433673
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1528 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488671.1; RP13-1039J1.2-004; OTTHUMT00000338362.1
Alternative gene names: ENSG00000184115.11; RP13-1039J1.2; OTTHUMG00000167880.1; ENSG00000273471.1; RP13-1039J1.4; AC112229.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 73.8511 coding 
CPAT coding probability 99.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LIMS4-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC108938.5.1-1:5
4.0 lnc-AC108938.5.1-1:5
4.1 lnc-AC108938.5.1-1:5
5.0 lnc-AC108938.5.1-1:5
5.1 lnc-EN1-88:6
5.2 lnc-LIMS4-1:6