Transcript: lnc-LIN28B-10:5

Basic information

LNCipedia transcript ID: lnc-LIN28B-10:5 
LNCipedia gene ID: lnc-LIN28B-10
Location (hg38): chr6:105403313-105479233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1314 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011908; NONHSAT114219
Alternative gene names: XLOC_005409; linc-PRDM1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6013 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIN28B-10:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf112-1:1
3.1 lnc-C6orf112-2:1
4.0 lnc-C6orf112-2:1
4.1 lnc-C6orf112-2:1
5.0 lnc-C6orf112-2:1
5.1 lnc-SMPD2-63:5
5.2 lnc-LIN28B-10:5