Transcript: lnc-LINC00483-1:2

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:2 
LNCipedia gene ID: lnc-LINC00483-1
Location (hg38): chr17:50757400-50767557
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1021 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT054717
Alternative gene names: FLJ20694


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4013 non-coding 
CPAT coding probability 62.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00483-1:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD40-1:6
4.0 LINC00483:2
4.1 LINC00483:2
5.0 LINC00483:2
5.1 lnc-ANKRD40-5:2
5.2 lnc-LINC00483-1:2