Transcript: lnc-LINC00854-1:23

Basic information

LNCipedia transcript ID: lnc-LINC00854-1:23 
LNCipedia gene ID: lnc-LINC00854-1
Location (hg38): chr17:43221417-43303713
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 966 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014
Alternative transcript names: ENST00000433702.1; TMEM106A-AS1-001; OTTHUMT00000255889.1; NONHSAT146900; NR_047479
Alternative gene names: ENSG00000236383.1; TMEM106A-AS1; OTTHUMG00000132641.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.5042 non-coding 
CPAT coding probability 74.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00854-1:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRCA1-1:1
4.0 LINC00854:3
4.1 LINC00854:3
5.0 LINC00854:3
5.1 lnc-LINC00854-1:4
5.2 lnc-LINC00854-1:23