Transcript: lnc-LINC00854-1:25

Basic information

LNCipedia transcript ID: lnc-LINC00854-1:25 
LNCipedia gene ID: lnc-LINC00854-1
Location (hg38): chr17:43224353-43303325
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 438 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT053843; ENST00000600764.1
Alternative gene names: ENSG00000236383.3; LINC00854; ENSG00000236383.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 160.9835 coding 
CPAT coding probability 32.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00854-1:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRCA1-1:6
4.0 LINC00854:5
4.1 LINC00854:5
5.0 LINC00854:5
5.1 lnc-LINC00854-1:6
5.2 lnc-LINC00854-1:25