Transcript: lnc-LINC00854-1:29

Basic information

LNCipedia transcript ID: lnc-LINC00854-1:29 
LNCipedia gene ID: lnc-LINC00854-1
Location (hg38): chr17:43216941-43224523
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 912 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000427995.1; TMEM106A-AS1-002; OTTHUMT00000255890.1; NONHSAT053830; ENST00000427995.5
Alternative gene names: ENSG00000236383.1; TMEM106A-AS1; OTTHUMG00000132641.1; ENSG00000236383.3; LINC00854; ENSG00000236383.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.5042 non-coding 
CPAT coding probability 63.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00854-1:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRCA1-1:2
4.0 LINC00854:9
4.1 LINC00854:9
5.0 LINC00854:9
5.1 lnc-LINC00854-1:11
5.2 lnc-LINC00854-1:29