Transcript: lnc-LINC02203-6:1

Basic information

LNCipedia transcript ID: lnc-LINC02203-6:1 
LNCipedia gene ID: lnc-LINC02203-6
Ensembl Gene ID: ENSG00000258654
Ensembl Transcript ID: ENST00000556397
Location (hg38): chr15:20344736-20359159
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556397; ENST00000556397.1; RP11-509A17.3-002; OTTHUMT00000414656.1; NONHSAT040606
Alternative gene names: ENSG00000258654; RP11-509A17.3; ENSG00000258654.1; OTTHUMG00000171661.1; AC026495.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.3091 non-coding 
CPAT coding probability 19.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LINC02203-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR4M2-4:1
3.1 lnc-OR4M2-6:1
4.0 lnc-OR4M2-6:1
4.1 lnc-OR4M2-6:1
5.0 lnc-OR4M2-6:1
5.1 lnc-SNRPN-96:1
5.2 lnc-LINC02203-6:1