Transcript: lnc-LLPH-2:11

Basic information

LNCipedia transcript ID: lnc-LLPH-2:11 
LNCipedia gene ID: lnc-LLPH-2
Ensembl Gene ID: ENSG00000197301
Ensembl Transcript ID: ENST00000536648
Location (hg38): chr12:65866804-65881578
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 750 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536648.5
Alternative gene names: ENSG00000197301.7; RP11-366L20.2; AC090673.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.0058 non-coding 
CPAT coding probability 28.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LLPH-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-366L20.2.1-2:22
4.1 lnc-RP11-366L20.2.1-2:22
5.0 lnc-RP11-366L20.2.1-2:22
5.1 lnc-LLPH-2:6
5.2 lnc-LLPH-2:11