Transcript: lnc-LMBRD1-5:23

Basic information

LNCipedia transcript ID: lnc-LMBRD1-5:23 
LNCipedia gene ID: lnc-LMBRD1-5
Ensembl Gene ID: ENSG00000230910
Ensembl Transcript ID: ENST00000419979
RefSeq ID: NR_125872
Location (hg38): chr6:68632663-68634324
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000419979.1; RP3-525N10.2-001; OTTHUMT00000041119.1; NR_125872; NR_125872.1
Alternative gene names: ENSG00000230910.1; RP3-525N10.2; OTTHUMG00000014981.1; ENSG00000230910.2; AL391807.1; LOC101928307


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.7531 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMBRD1-5:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL713998.1-2:1
4.0 lnc-AL713998.1-2:1
4.1 lnc-AL713998.1-2:1
5.0 lnc-AL713998.1-2:1
5.1 lnc-CEP162-90:23
5.2 lnc-LMBRD1-5:23