Transcript: lnc-LMF1-1:4

Basic information

LNCipedia transcript ID: lnc-LMF1-1:4 
LNCipedia gene ID: lnc-LMF1-1
Ensembl Gene ID: ENSG00000260496
Ensembl Transcript ID: ENST00000565401
Location (hg38): chr16:996319-997907
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565401.1; RP11-161M6.3-001; OTTHUMT00000420782.1; NONHSAT051909
Alternative gene names: ENSG00000260496.1; RP11-161M6.3; OTTHUMG00000172830.1; ENSG00000260496.2; ENSG00000260496.3; AC009041.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.0788 non-coding 
CPAT coding probability 12.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMF1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMF1-2:1
4.0 lnc-LMF1-1:4
4.1 lnc-LMF1-1:4
5.0 lnc-LMF1-1:4
5.1 lnc-PKMYT1-105:3
5.2 lnc-LMF1-1:4