Transcript: lnc-LMF1-3:6

Basic information

LNCipedia transcript ID: lnc-LMF1-3:6 
LNCipedia gene ID: lnc-LMF1-3
Ensembl Gene ID: ENSG00000260807
Ensembl Transcript ID: ENST00000563837
Location (hg38): chr16:976787-981293
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 705 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563837.1; RP11-161M6.2-006; OTTHUMT00000420709.1; NONHSAT051906
Alternative gene names: ENSG00000260807.2; RP11-161M6.2; OTTHUMG00000172822.1; ENSG00000260807.6; AC009041.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.8283 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMF1-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF8-3:5
4.0 lnc-LMF1-3:6
4.1 lnc-LMF1-3:6
5.0 lnc-LMF1-3:6
5.1 lnc-PKMYT1-106:12
5.2 lnc-LMF1-3:6