Transcript: lnc-LMF1-3:8

Basic information

LNCipedia transcript ID: lnc-LMF1-3:8 
LNCipedia gene ID: lnc-LMF1-3
Ensembl Gene ID: ENSG00000260807
Ensembl Transcript ID: ENST00000562570
Location (hg38): chr16:975761-980913
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3222 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562570.1; RP11-161M6.2-004; OTTHUMT00000420704.1; NONHSAT051901
Alternative gene names: ENSG00000260807.2; RP11-161M6.2; OTTHUMG00000172822.1; ENSG00000260807.6; AC009041.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.6102 non-coding 
CPAT coding probability 86.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LMF1-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF8-3:6
4.0 lnc-LMF1-3:8
4.1 lnc-LMF1-3:8
5.0 lnc-LMF1-3:8
5.1 lnc-PKMYT1-106:17
5.2 lnc-LMF1-3:8