Transcript: lnc-LMNTD1-3:1

Basic information

LNCipedia transcript ID: lnc-LMNTD1-3:1 
LNCipedia gene ID: lnc-LMNTD1-3
Ensembl Gene ID: ENSG00000256440
Ensembl Transcript ID: ENST00000545704
Location (hg38): chr12:25831416-25834182
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 373 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545704; ENST00000545704.1; RP11-443N24.3-001; OTTHUMT00000402338.1; NONHSAT027362
Alternative gene names: ENSG00000256440; RP11-443N24.3; ENSG00000256440.1; OTTHUMG00000169124.1; AC019209.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.117 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMNTD1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFLTD1-3:1
3.1 lnc-IFLTD1-3:1
4.0 lnc-IFLTD1-3:1
4.1 lnc-IFLTD1-3:1
5.0 lnc-IFLTD1-3:1
5.1 lnc-WBP11-84:1
5.2 lnc-LMNTD1-3:1