Transcript: lnc-LMO2-1:3

Basic information

LNCipedia transcript ID: lnc-LMO2-1:3 
LNCipedia gene ID: lnc-LMO2-1
Ensembl Gene ID: ENSG00000255133
Ensembl Transcript ID: ENST00000525320
Location (hg38): chr11:33814877-33822095
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 308 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525320; ENST00000525320.1; RP11-646J21.2-001; OTTHUMT00000388674.1
Alternative gene names: ENSG00000255133; RP11-646J21.2; ENSG00000255133.1; OTTHUMG00000166247.1; AC113192.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.5376 non-coding 
CPAT coding probability 21.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMO2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LMO2-1:3
3.1 lnc-LMO2-1:3
4.0 lnc-LMO2-1:3
4.1 lnc-LMO2-1:3
5.0 lnc-LMO2-1:3
5.1 lnc-CD59-6:4
5.2 lnc-LMO2-1:3