Transcript: lnc-LMX1A-2:1

Basic information

LNCipedia transcript ID: lnc-LMX1A-2:1 
LNCipedia gene ID: lnc-LMX1A-2
Ensembl Gene ID: ENSG00000233693
Ensembl Transcript ID: ENST00000421530
RefSeq ID: NR_038072
Location (hg38): chr1:164769116-164774641
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1963 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000421530.1; RP11-506O24.1-001; OTTHUMT00000083368.1; NONHSAT007287; NR_038072; NR_038072.1
Alternative gene names: ENSG00000233693.1; RP11-506O24.1; OTTHUMG00000034481.1; AL357568.1; LOC100505795


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.2161 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LMX1A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMX1A-2:1
4.0 lnc-LMX1A-2:1
4.1 lnc-LMX1A-2:1
5.0 lnc-LMX1A-2:1
5.1 lnc-SH2D1B-35:1
5.2 lnc-LMX1A-2:1