Transcript: lnc-LNPEP-8:2

Basic information

LNCipedia transcript ID: lnc-LNPEP-8:2 
HGNC Gene Symbol: lnc-LNPEP-8    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1340
Ensembl Gene ID: ENSG00000250331
Ensembl Transcript ID: ENST00000504012
Location (hg38): chr5:97504696-97671046
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 724 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009467; ENST00000504012; ENST00000504012.1; RP11-1E3.1-001; OTTHUMT00000370137.1; NONHSAT102932
Alternative gene names: XLOC_004483; linc-RGMB-2; ENSG00000250331; RP11-1E3.1; ENSG00000250331.1; OTTHUMG00000162701.1; LINC01340;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.6031 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LNPEP-8:2 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2215E18.1.1-1:1
3.1 lnc-CTD-2215E18.1.1-2:1
4.0 LINC01340:2
4.1 LINC01340:2
5.0 LINC01340:2
5.1 lnc-GPR150-49:2
5.2 lnc-LNPEP-8:2