Transcript: lnc-LNPEP-8:5

Basic information

LNCipedia transcript ID: lnc-LNPEP-8:5 
LNCipedia gene ID: lnc-LNPEP-8
Location (hg38): chr5:97504712-97899659
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250331.1|FTMT21900048830.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -173.1993 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LNPEP-8:5 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01340:5
5.0 LINC01340:5
5.1 lnc-GPR150-49:5
5.2 lnc-LNPEP-8:5